API Reference
=============

Top-level package
-----------------

.. automodule:: atomrdf
    :members:

KnowledgeGraph
--------------
.. automodule:: atomrdf.graph
    :members:

Namespace
---------
.. automodule:: atomrdf.namespace
    :members:

Stores
------
.. automodule:: atomrdf.stores
    :members:

Properties
----------
.. automodule:: atomrdf.properties
    :members:

Visualisation
-------------
.. automodule:: atomrdf.visualize
    :members:

Data models
-----------

Structure
~~~~~~~~~
.. automodule:: atomrdf.datamodels.structure
    :members:

Activity
~~~~~~~~
.. automodule:: atomrdf.datamodels.activity
    :members:

Dataset
~~~~~~~
.. automodule:: atomrdf.datamodels.dataset
    :members:

Physical quantities
~~~~~~~~~~~~~~~~~~~
.. automodule:: atomrdf.datamodels.physicalquantities
    :members:

Build helpers
-------------
.. automodule:: atomrdf.build.bulk
    :members:

.. automodule:: atomrdf.build.defect
    :members:

Workflow parser
---------------
.. automodule:: atomrdf.io.workflow_parser
    :members: