Index A | C | D | G | I | K | M | N | O | Q | R | S | T | U | V | W A activity_ids (atomrdf.graph.KnowledgeGraph property) add() (atomrdf.graph.KnowledgeGraph method), [1] add_calculated_quantity() (atomrdf.graph.KnowledgeGraph method) add_gb() (atomrdf.structure.System method) add_interstitial_impurities() (atomrdf.structure.System method) add_namespace() (atomrdf.network.network.OntologyNetwork method) add_path() (atomrdf.network.network.OntologyNetwork method) add_structure() (atomrdf.graph.KnowledgeGraph method), [1] add_term() (atomrdf.network.network.OntologyNetwork method) add_vacancy() (atomrdf.structure.System method) archive() (atomrdf.graph.KnowledgeGraph method) atomrdf.graph module atomrdf.namespace module atomrdf.network.network module atomrdf.stores module atomrdf.structure module atomrdf.workflow.workflow module auto_query() (atomrdf.graph.KnowledgeGraph method) C close() (atomrdf.graph.KnowledgeGraph method) create_node() (atomrdf.graph.KnowledgeGraph method) create_query() (atomrdf.network.network.OntologyNetwork method) create_store() (in module atomrdf.stores) D delete() (atomrdf.structure.System method) draw() (atomrdf.network.network.OntologyNetwork method) G get_path_from_sample() (atomrdf.network.network.OntologyNetwork method) get_sample() (atomrdf.graph.KnowledgeGraph method) get_shortest_path() (atomrdf.network.network.OntologyNetwork method) get_system_from_sample() (atomrdf.graph.KnowledgeGraph method) graph (atomrdf.graph.KnowledgeGraph attribute) I inspect_sample() (atomrdf.graph.KnowledgeGraph method) iterate_graph() (atomrdf.graph.KnowledgeGraph method) K KnowledgeGraph (class in atomrdf.graph) M module atomrdf.graph atomrdf.namespace atomrdf.network.network atomrdf.stores atomrdf.structure atomrdf.workflow.workflow N n_samples (atomrdf.graph.KnowledgeGraph property) name (atomrdf.namespace.Namespace attribute) Namespace (class in atomrdf.namespace) network (atomrdf.namespace.Namespace attribute) O ontology (atomrdf.graph.KnowledgeGraph attribute) OntologyNetwork (class in atomrdf.network.network) Q query() (atomrdf.graph.KnowledgeGraph method) query_sample() (atomrdf.graph.KnowledgeGraph method) R remove() (atomrdf.graph.KnowledgeGraph method) S sample_ids (atomrdf.graph.KnowledgeGraph property) sample_names (atomrdf.graph.KnowledgeGraph property) sgraph (atomrdf.graph.KnowledgeGraph attribute) store (atomrdf.graph.KnowledgeGraph attribute) store_alchemy() (in module atomrdf.stores) store_memory() (in module atomrdf.stores) substitute_atoms() (atomrdf.structure.System method) System (class in atomrdf.structure) T terms (atomrdf.graph.KnowledgeGraph attribute) to_file() (atomrdf.graph.KnowledgeGraph method) (atomrdf.structure.System method) to_graph() (atomrdf.structure.System method) triples() (atomrdf.graph.KnowledgeGraph method), [1] U unarchive() (atomrdf.graph.KnowledgeGraph class method) V value() (atomrdf.graph.KnowledgeGraph method) visualise() (atomrdf.graph.KnowledgeGraph method) visualize() (atomrdf.graph.KnowledgeGraph method) W write() (atomrdf.graph.KnowledgeGraph method)